PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P19870_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 311aa    MW: 33971.4 Da    PI: 4.8718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P19870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.7e-15111162155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++++h ++Er+RR+++N+ ++ Lr+l+P     ++k+ + a+i   +v+YIk+Lq
  GSMUA_Achr8P19870_001 111 QKTSHIAVERNRRKQMNEHLSVLRSLMPCF---YAKRGDQASIIGGVVDYIKELQ 162
                            689**************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.81E-16108166No hitNo description
SuperFamilySSF474591.44E-18109181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.98110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-12111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15111173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-12116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGEGLSELFE HPEFTRTDLA VDTSPEDLFS ILETFEDAIT KEVPLFDPFQ GSNFSPRVGE  60
QPNTGLVSQG WSAGPSETDD ALEEAGQALK KRKLSDSPVS PTEAGIHDGQ QKTSHIAVER  120
NRRKQMNEHL SVLRSLMPCF YAKRGDQASI IGGVVDYIKE LQQVLQSLEA KKQRKVYSEV  180
LSPRPLTPQP GSPYMPKMQQ NYVSPTLASS HESSSPFFSS ISELAANSKS PVADVEVKFS  240
GPNVILKTAS HRIPGQVLKI IAALEGLALE ILHVSISTTD DTMLNSFTIK IGIECVLSAE  300
ELAQAIQQTF S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413939.10.0PREDICTED: transcription factor MUTE-like
SwissprotQ700C74e-92SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLM0TRZ00.0M0TRZ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P19870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-78bHLH family protein